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Raw and intermediate data for "An integrative chemical and genomic similarity approach linking fungal secondary metabolites and biosynthetic gene clusters"

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Figshare2026-01-14 更新2026-04-28 收录
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https://figshare.com/articles/dataset/_b_Raw_and_intermediate_data_for_An_integrative_chemical_and_genomic_similarity_approach_linking_fungal_secondary_b_b_metabolites_and_biosynthetic_gene_clusters_b_/28380443
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资源简介:
BGC_grouping_aS7_PROCESSED.csv: Manually corrected results of clustering antiSMASH BGC regions by gene content.BGC_grouping_aS7_unprocessed.csv: Initial results of clustering antiSMASH BGC regions by gene content.annot.anotations_for_BGCs.extended.txtanti.antiSMASH7_unscaffolded.prosmash_output.tsv: results after combining antiSMASH results using in-house script prosmash.py.mibig_to_DTO.AA.tsv: Combined results of diamond blast searches of MIBiG v.3.1 amino acid queries to the A. fischeri genomes.pan.Fischeri_pangenome_info.csv: Pangenome information, i.e. correspondence of genes/transcripts across the 16 strains. Orthologous genes are tracked by the same IDX.strain_names.csv: Throughout the project and before receiving official strain designations, the different collaborating labs used internal IDs which are provided here.mibig_BGCs_genes.tsv: List of all genes per BGC in MIBiG v3.1compounds_for_clustering.csv: SMILES and names of all compounds in MIBiG v3.1 and at the bottom, the experimental SMs found in A. fischeri.compounds_strain_temperature_count.csv: count of the number of replicates (0–3) in which a given SM was detected in a given strain at a given temperature.
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2026-01-14
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