Annotation spreadsheet for transcriptome assembly of Pseudacris regilla

A spreadsheet of contig sequence similarity for the Pseudacris regilla assembly. BLASTX hits to Xenopus tropicalis, HMMER matches to the Pfam-A database (for predicted ORFs), and other annotation information is given. Column headings are:Contig: contig name
Length (bp): length in base pairs
%GC content: percent of contig sequence that is C or G
Longest ORF (min 50 amino acids): the longest ORF identified on the contig that was at least 50 amino-acids long
Pfam (E-value threshold 0.1): A colon-delimited list of matched Pfam accessions, E-values, and domain descriptions
Xenopus.tropicalis BLASTX E-value: E-value of the best BlastX match to X. tropicalis proteins.
bit: bit score of this match
id%: percentage identity (protein sequence) of this match to the query contig
description: descriptive text in the fasta header of the best match
RefSeq ID: associated RefSeq ID for best match
Entrez gene ID: associated Entrez gene ID for best match
UniProt ID: associated UniProt ID for best match