Unfiltered Called SNPs (".loci" format)

This file is the output of the pyRAD pipeline (pyRAD ".loci" format) ran on the raw sequence reads (accessible via GenBank, BioProject PRJNA382467) using the parameters which are given in the the pyRAD parameter file despoted in this repository ("pyRAD_parameters_file.txt"). It contains several technical replicates (which are denoted by the suffix "_R"), which are used in the study to determine the consistency of SNP calls.

本文件为针对原始测序读数运行pyRAD分析流程所得的输出结果，格式为pyRAD的".loci"格式；原始测序读数可通过基因银行（GenBank）及生物项目（BioProject）PRJNA382467获取，本次分析采用的参数来自本仓库中存放的pyRAD参数文件"pyRAD_parameters_file.txt"。该文件包含多组技术重复样本（以后缀"_R"标识），本研究借助这些样本评估SNP调用的一致性。