Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC.

附加文件2：补充表1. 本研究中所使用的中国组装阶段及其他犬类基因组的组装统计数据。补充表2. 中国支架序列在整理阶段的Diploidocus统计数据与评级。补充表3. GeMoMa汇总统计数据及注释比对结果。补充表4. 巴辛吉犬（Basenji）的AMY2B基因短读长映射数据及预估拷贝数。补充表5. CanFam_Bas核线粒体序列（nuclear mitochondrial sequence，缩写NUMT）片段。补充表6. CanFam_Bas核线粒体序列（NUMT）：合并8kb范围内的片段。补充表7. 巴辛吉犬与德国牧羊犬的长读长数据相较于3个参考基因组的结构变异调用结果。补充表8. 用于读长映射与单核苷酸变异（single nucleotide variant，缩写SNV）分析的犬品种。补充表9. 来自DBVDC的代表性犬品种的序列读取存档（Sequence Read Archive，缩写SRA）运行数据。