Data from: Highly and lowly domesticated endangered fish from a conservation hatchery diverge in their thermal physiology, transcriptome, and methylome

We investigated whether elevated rearing temperature through larval
development of Delta smelt adjusted upper thermal tolerance limits
(acclimation) in Delta Smelt, whether upper thermal tolerance and
plasticity (acclimation ability) differed between fish with old or recent
hatchery ancestry (high or low domestication index; DI), and temperature
and DI effects on liver transcriptome and methylome patterns. This dataset
contains global methylation levels from CpG count matrices for every 100
individuals, generated using the program Bismark. Each file corresponds to
a single individual fish. Within each file is a matrix of loci
(chromosomal and SNP location in the Delta smelt genome) and whether the
site is methylated or not. The file identification corresponds to the fish
ID. Metadata for the fish (including treatment conditions) is found in the
file: methyl_metadata.xlsx. All procedures were approved by the
UC Davis Institutional Animal Care and Use Committee (IACUC Protocol
#21915).