Connectivity matrix of the potential connectivity (axo-dendritic appositions) of a SSCX model

This is a simplified view of the potential synaptic connectivity of layers 2 and 3 of the model deposited under https://zenodo.org/records/8026353. Potential synaptic connectivity means, that all axo-dendritic appositions (or touches) are contained. This is in contrast to the data deposited under 10.5281/zenodo.10079406, where the number of appositions was reduced to a biologically realistic number with a stochastic algorithm based on cooperative synapse formation. Additionally, the file contains random controls of the connectome: A configuration model control (preserves node degrees) and a distance-dependent control. The data is in a format that can be loaded using our Connectome_Utilities package. We have converted the internal connectivity of the MICrONS dataset into the same format (found here), allowing researchers to easily run the same analysis scripts on both datasets. To load: - the data: import conntility M = conntility.ConnectivityMatrix.from_h5("rat_struc_l23_with_controls.h5", "data") - the distance dependent control: import conntility M = conntility.ConnectivityMatrix.from_h5("rat_struc_l23_with_controls.h5", "dist_dep") - the configuration model control: import conntility M = conntility.ConnectivityMatrix.from_h5("rat_struc_l23_with_controls.h5", "configuration_model")