Microbiome_effect_on_lipid_metabolism

Microbiome_effect_on_lipid_metabolism This dataset is part of the project by Maria Zimmermann-Kogadeeva in collaboration with Josef Ecker and teams. It contains data generated in our study as well as public datasets that we used as a reference for proteomics analysis. Subfolders: proteomics_data - proteomics data from our study in mice colonized with OMM12 community lipidomics data - lipidomics data from our study in mice colonized with OMM12 community Duparc_et_al - data from Duparc et al, Hepatocyte MyD88 affects bile acids, gut microbiota and metabolome contributing to regulate glucose and lipid metabolism, Gut (2017), https://doi.org/10.1136/gutjnl-2015-310904 expression_atlas - public data downloaded from ExpressionAtlas (Moreno et al, Expression Atlas update: gene and protein expression in multiple species, Nucleic Acids Research (2022), https://doi.org/10.1093/nar/gkab1030) UNIPROT - Affymetrix Mouse UNIPROT ID mapping file downloaded from Uniprot (The UniProt ConsortiumUniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research (2025), https://doi.org/10.1093/nar/gkae1010) We are applying the Creative Commons Attribution 4.0 International License for all copyrightable material in this repository. This means that anyone is free to copy, reuse, display and distribute the information in our folder, provided you give us credit by citing this repository. If you are reusing data provided in this folder but downloaded from other courses, please include the additional credit information provided in each subfolder. https://creativecommons.org/licenses/by/4.0/