Yassine et al: M catarrhalis Supp Data

Supplementary_data_1Metadata and QUAST results for the final M. catarrhalis dataset used in this study
Supplementary_data_2Clonal complex (CC) information by goeBURST
Supplementary_data_3EggNOG mapper results (core genes)
Supplementary_data_4Per-genome assignment rates for all genes included in the core genome multilocus sequence typing scheme
Supplementary_data_51,319 cgMLST profiles for M. catarrhalis genomes used in this study
Supplementary_data_6Per-gene assignment rates for all genes included in the core genome multilocus sequence typing scheme
Supplementary_data_71,319 cgMLST profiles for non-M. catarrhalis genomes used in this study
Supplementary_data_8Pairwise distance matrix between non-M. catarrhalis and M. catarrhalis genomes used in this study
Supplementary_data_9Genomic characteristic of M. catarrhalis genomes used in this study
Supplementary_data_10Description of SR core genes
Supplementary_data_11Description of SS core genes
Supplementary_data_12Clade characteristics
Supplementary_data_13Quality control thresholds used for the DCHS genomes
Supplementary_data_14Details of genomes available in NCBI SRA database with information about excluded genomes
Supplementary_data_15Details of genomes available in NCBI nucleotide/assembly database with information about excluded genomes
Supplementary_data_16Assembly quality control thresholds used for the non-DCHS genomes
Supplementary_data_17Details of Moraxella genomes available in rMLST database
Supplementary_data_18Details of Moraxella genomes used to investigate the phylogenetic placement of M. catarrhalis among Moraxella species
Supplementary_data_19Details of motifs, genes, primers used in this study
Supplementary_data_20Accession numbers of genes sequences used in this study