Supplementary materials - Toward Microbiome-Informed Selection

Supplementary File 1. Levels of phenotypic traits and their classification within the entire studied population. Supplementary File 2. Results of statistical analysis (ANOVA) of the analysed production traits. Supplementary File 3. Results of association analysis of detected phyla abundances with the levels of the analysed phenotypic traits. Supplementary File 4. Results of association analysis of detected genera abundances with the levels of the analysed phenotypic traits. Supplementary File 5. Phyla and genera associated with selected phenotypic traits, selected for microbiome GWAS analysis. Supplementary File 6. Results of the microbiome GWAS conducted using the MLMA method at the phylum and genus levels for selected taxa associated with phenotypic trait levels. Supplementary File 7. The top four most significant SNPs from microbiome GWAS analysis performed on the genus level, along with their annotations and associated genes. The research was funded by the state budget under the Implementation Doctorate program of the Polish Ministry of Education and Science (MEiN), project no. DWD/6/0206/2022, as well as by the funds of KR Kietrz and the University of Agriculture in Kraków.