Contrasting genomic trajectories of Bartonellaceae symbionts of planthoppers

This repository currently contains the following files, associated with the study:Ma M., Michalik A., Deng J., Hu Y., Łukasik P. (preprint-2025). Contrasting genomic trajectories of Bartonellaceae symbionts of planthoppers. bioRxiv. https://doi.org/10.1101/2025.08.24.67200000_Supplementary_Tables.xlsx: eight supplementary tables including sample metadata, bacterial composition, genome characteristics, genetic distances among Tokpelaia strains, and details of annotation and gene pathway reconstruction.Supplementary Table S1. Characteristics of the processed planthopper samples where Bartonellaceae were detected, and sample processing details.Supplementary Table S2. 16S rRNA sequences reconstructed using PhyloFlash from metagenomic data for Bartonellaceae-hosting planthopper samples.Supplementary Table S3. Binning information of metagenomic data.Supplementary Table S4. Summary of scaffolds assigned to different bins in planthopper metagenomes.Supplementary Table S5. 16S rRNA identities for Tokpelaia symbionts of planthoppers and ants.Supplementary Table S6. Average amino acid identity for phylogentically informative genes from genomes of Tokpelaia symbionts of planthoppers and ants.Supplementary Table S7. KEGG Orthologs (KOs) found in symbiont draft genomes.Supplementary Table S8. The list of genes identified in Tokpelaia-OECLID genome.16S_rRNA_align.phy, draft_genome.phy, 16S_RAxML_bipartitions.all.tre, draft_genome_RAxML_bipartitions.all.tre: alignment and raw tree files based on 16S rRNA and whole-genome data.*_Tokpelaia.fasta, *_Tokpelaia.gbk: genome sequences and annotation files generated by Prokka for Tokpelaia from six planthopper species.