List of 844 S. Typhimurium proteins quantified with a minimum of three valid values in at least one setup of the dual proteome shotgun samples of S. Typhimurium infected human HeLa cells by means of data-independent acquisition (DIA).

Comparisons were analysed by t-testing and significant hits determined using as cut-off values a permutation based false discovery rate (FDR) of 0.05 and 0.01 (100 permutations) and a background variance parameter S0 of 1. Table headers are as in S2 Table with regulon and genome locus and strand info added. (XLSX)