Breedbase

Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see RTBbase.org). There are a number of instances running for diverse crops, including Cassava (https://cassavabase.org, sweet potato (https://sweetpotatobase.org), banana (https://musabase.org), rice (https://ricebase.org), tomato and other Solanaceae (https://solgenomics.net/) and many others. The Breedbase manual provides detailed information about available features. Resources in this dataset:Resource Title: Website Pointer for Breedbase. File Name: Web Page, url: https://breedbase.org/ Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ.
Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection.
Analyze utilities:
Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering
Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse
Other -- Ontology Browser; Compose a New Trait.

Breedbase是一款基于网络的综合性育种管理和分析软件。该软件可应用于设计田间布局、利用平板电脑收集表型信息、支持田间基因分型样本的收集、存储大量高密度基因分型信息，并提供与基因组选择相关的分析和预测。Breedbase支持育种应用程序编程接口（BrAPI）标准，该标准定义了交换育种数据的数据对象和方法。Breedbase系统源自Sol基因组网络（SGN）和Cassavabase及相关站点（参见RTBbase.org）。该系统为多种作物提供运行实例，包括木薯（https://cassavabase.org）、甘薯（https://sweetpotatobase.org）、香蕉（https://musabase.org）、水稻（https://ricebase.org）、番茄及其他茄科植物（https://solgenomics.net/）等。Breedbase手册提供了关于可用功能的详细信息。本数据集中包含的资源包括：
资源标题：Breedbase网站指针。文件名：网页，URL：https://breedbase.org/
搜索工具：向导；存取编号和地块；生物体；后代和杂交；田间试验；基因分型板；基因分型数据项目；基因分型方案；性状；图像；人员；常见问题解答。
管理工具：用户角色；育种项目；位置；存取编号；种子批次；杂交；田间试验；基因分型试验；田间记录应用；表型；条形码；标签设计器；下载；上传；ODK数据收集。
分析工具：
育种工具 -- 选择指数；基因组选择；种群结构；存取编号使用；比较试验；图形过滤
序列分析 -- BLAST；VIGS工具；HapMap Jbrowse
其他 -- 本体浏览器；创建新性状。