Datasets for Léonard et al. ToRQuEMaDA: Tool for Retrieving Queried Eubacteria, Metadata and Dereplicating Assemblies

This archive provides details on the 9 datasets referenced in Table 1 of the article:A. Bacteria (49 orgs)
B. Bacteria (151 orgs)
C. Actinobacteria (20 orgs)D. Bacteroidetes (37 orgs)E. Chlamydia (32 orgs)F. Cyanobacteria (46 orgs)G. Firmicutes (22 orgs)H. Proteobacteria (36 orgs)I. Archaea (86 orgs)
It contains 5 directories:- tables are the TSV tables with the taxonomic details and the FTP download links- 42-reports are the TSV contamination reports by our software Forty-Two (see https://metacpan.org/release/Bio-MUST-Apps-FortyTwo)- kronas are the HTML taxonomic plots generated with Krona (see https://github.com/marbl/Krona/)- supermatrices are the FASTA supermatrices of ribosomal proteins- trees are the Newick trees computed by IQ-TREE