Data from the article "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models"

Data from the article: "The mitochondrial phylogeny of land plants shows support for Setaphyta under non-stationary substitution models" Filipe de Sousa, Peter Civáň, João Brazão, Peter G. Foster, Cymon J. Cox These data are divided in four folders: * 1_36_gene_nt_alignments_&_trees - contains 36 single gene nucleotide alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 2_36_gene_aa_alignments_&_trees - contains 36 single gene amino acid alignments and the corresponding trees inferred from a MCMC analysis on the program p4 * 3_concatenated_alignments_&_trees - contains the nucleotide, codon-degenerate and amino acid alignments of 36 concatenated genes and the corresponding trees inferred from MCMC analyses on the programs p4 and phylobayes with composition homogeneous, tree-heterogeneous and site-heterogeneous models; trees correspond to figures S1-S7 on the online supplemental file. * 4_concatenated_ML_trees - contains the ML trees from the analyses of the concatenated datasets (nucleotide, codon degenerate and amino acid).本数据集源自论文《陆地植物线粒体系统发育分析在非平稳替换模型下为多枝植物类群（Setaphyta）提供支持依据》，作者为Filipe de Sousa、Peter Civáň、João Brazão、Peter G. Foster及Cymon J. Cox。本数据集分为四个文件夹： * 1_36_gene_nt_alignments_&_trees：包含36个单基因核苷酸序列比对文件，以及通过p4软件开展马尔可夫链蒙特卡洛（Markov Chain Monte Carlo, MCMC）分析得到的对应系统发育树。 * 2_36_gene_aa_alignments_&_trees：包含36个单基因氨基酸序列比对文件，以及通过p4软件开展MCMC分析得到的对应系统发育树。 * 3_concatenated_alignments_&_trees：包含36个基因合并后的核苷酸、密码子简并性及氨基酸序列比对文件，以及通过p4和phylobayes软件，采用组分均一、树异质性及位点异质性模型开展MCMC分析得到的对应系统发育树；上述系统发育树对应在线补充材料中的图S1至S7。 * 4_concatenated_ML_trees：包含对合并数据集（核苷酸、密码子简并性及氨基酸序列）进行分析得到的最大似然（Maximum Likelihood, ML）系统发育树。