Qin_etal_2022_AEM_code_data

The MATLAB code and data for figures, tables, and results in the peer-reviewed paper "A deterministic model for understanding nonlinear viral dynamics in oysters" by Qubin Qin, Jian Shen, and Kimberly S. Reece, published in Applied and Environmental Microbiology in 2022. Data sets of experimental results used in the example case studies are from published papers: the in-host dynamics of OsHV-1 in two oyster families are from Segarra et al. (2014) and the in-host dynamics of NoV and TV are from Drouaz et al. (2015), respectively. Segarra A, Baillon L, Tourbiez D, Benabdelmouna A, Faury N, Bourgougnon N, Renault T. 2014. Ostreid herpesvirus type 1 replication and host response in adult Pacific oysters, Crassostrea gigas. Vet Res 45:103. Drouaz N, Schaeffer J, Farkas T, Le Pendu J, Le Guyader FS. 2015. Tulane virus as a potential surrogate to mimic norovirus behavior in oysters. Appl Environ Microbiol 81:5249–5256.