ENCODE tissue data (221111)

These datasets contain processed peak-calls from functional genomics experiments used to train deep DNA-sequence models. Histone and CTCF ChIP-seq, ATAC-seq and DNase-seq experiments from mouse and human tissues were included. Details about processing are provided in the accompanying manuscript. Metadata about experiments are included in the 221111_encode_metadata_processed.tsv table.Data were downloaded from the ENCODE data portal. Please cite all the references below when using these data.<br><br>Luo, Yunhai, et al. "New developments on the Encyclopedia of DNA Elements (ENCODE) data portal." <i>Nucleic acids research</i> 48.D1 (2020): D882-D889.<br>ENCODE Project Consortium. "An integrated encyclopedia of DNA elements in the human genome." <i>Nature</i> 489.7414 (2012): 57.<br><br>Rakowski, Alexander, et al. "Metadata-guided Feature Disentanglement for Functional Genomics." <i>arXiv preprint arXiv:2405.19057</i> (2024). <br>