遇见数据集

SNP data of 181 aus accessions

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Zenodo2025-06-06 更新2026-05-26 收录
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Genome-wide SNP genotypes (18,128,777 SNPs) for the 181 accessions were retrieved from SNP-Seek-International Rice Research Institute (https://snp-seek.irri.org/). SNPs with >25% missing data and minor allele frequency (MAF) <0.05 were excluded. A subset of 458,615 SNPs was retained after LD pruning (r² < 0.8 within a 2 kb window and 1 SNP step).

针对181份种质资源的全基因组单核苷酸多态性(Single Nucleotide Polymorphism, SNP)基因型数据(共包含18128777个SNP位点),从国际水稻研究所的SNP-Seek数据库(https://snp-seek.irri.org/)获取。对缺失数据占比超过25%且次要等位基因频率(Minor Allele Frequency, MAF)小于0.05的SNP位点予以剔除;经连锁不平衡(Linkage Disequilibrium, LD)修剪(在2kb窗口内以1个SNP为步长,筛选连锁不平衡系数r²小于0.8的位点)后,最终保留了458615个SNP位点。

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Zenodo
创建时间:
2025-06-06
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