遇见数据集

GTP hydrolysis by the Ran-RanGAP complex

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Zenodo2020-09-29 更新2026-05-25 收录
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资源简介:

<strong>1K9D_MD_initial.7z:</strong> PDB and PSF files of the model system of Ran-RanGAP complexed with the GTP utilized in the classical and QM/MM simulations; <strong>qmpart_pes.7z:</strong> coordinates of the QM subsystems obtained for all stationary points (ES, TS1, INT, TS2 and PROD) on the potential energy surface; <strong>ES_QMMM-MD.7z:</strong> trajectory of the QM subsystem of the ES complex obtained in the QM/MM MD run.

<strong>1K9D_MD_initial.7z</strong>:用于经典分子动力学(Molecular Dynamics, MD)与QM/MM(Quantum Mechanics/Molecular Mechanics,量子力学/分子力学)模拟的Ran-RanGAP与GTP(鸟苷三磷酸)结合复合物模型体系的PDB(Protein Data Bank,蛋白质数据库)文件及PSF(Protein Structure File,蛋白质结构文件);<strong>qmpart_pes.7z</strong>:势能面(potential energy surface, PES)上所有驻点(stationary point,包含ES、TS1、INT、TS2与PROD)对应的QM(Quantum Mechanics,量子力学)子体系的坐标;<strong>ES_QMMM-MD.7z</strong>:经QM/MM MD运行得到的ES复合物的QM子体系轨迹文件。

提供机构:
Zenodo
创建时间:
2020-09-29
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