Named Entity Corpus for Occupational Substance Exposure Assessment

This is a corpus consisting of selected sections (i.e., Abstract, Methods and Results) of scientific research articles concerning occupational exposures to two different types of substance, i.e., diesel exhaust (51 articles) and respirable crystalline silica (RCS) (50 articles). The article sections have been annotated by experts in the field with 6 categories of named entities (NEs) relevant to the assessment of occupational substance exposures, particularly in the context of Job Exposure Matrices (JEMs). The corpus is available in two different formats, brat standoff format and JSON. The corpus and associated NER models are described in more detail in the following atricle, which should be cited if you use the corpus: Thompson, P., Ananiadou, S., Basinas I., Brinchmann, B. C., Cramer, C., Galea, K. S., Ge, C., Georgiadis, P., Kirkeleit, J., Kuijpers, E., Nguyen, N., Nuñez, R., Schlünssen, V., Stokholm, Z. A., Taher, E. A., Tinnerberg, H., Van Tongeren, M. and Xie, Q. (2024). Supporting the working life exposome: annotating occupational exposure for enhanced literature search. PLoS ONE 19(8): e0307844本语料库选取了两类职业暴露相关科研论文的指定章节（即摘要、方法与结果部分），涉及两种不同物质：柴油机尾气（共51篇文献）与可吸入结晶二氧化硅（respirable crystalline silica, RCS，共50篇文献）。 上述论文章节已由该领域专家完成标注，共包含6类与职业物质暴露评估相关的命名实体（named entities, NEs），尤其适配工作暴露矩阵（Job Exposure Matrices, JEMs）的应用场景。 本语料库提供两种存储格式：brat标注分离格式（brat standoff format）与JSON格式。 本语料库及配套的命名实体识别（Named Entity Recognition, NER）模型的详细说明见下述论文，若使用本语料库，请引用该文献： Thompson, P., Ananiadou, S., Basinas I., Brinchmann, B. C., Cramer, C., Galea, K. S., Ge, C., Georgiadis, P., Kirkeleit, J., Kuijpers, E., Nguyen, N., Nuñez, R., Schlünssen, V., Stokholm, Z. A., Taher, E. A., Tinnerberg, H., Van Tongeren, M. and Xie, Q. (2024). Supporting the working life exposome: annotating occupational exposure for enhanced literature search. PLoS ONE 19(8): e0307844