Modelling buoyancy-driven vertical movement of Trichodesmium application in the Great Barrier Reef

The data was collected for the parameterisation of the influence of tuft-shaped Trichodesmium colonies on the vertical movement of Trichodesmium in the GBR. Linux operating system, C compiler and NETCDF library were used to build the modified EMS applications on AIMS HPC. The EMS version used is 1.2.1. The modified EMS was derived from the eReefs model (https://ereefs.org.au/ereefs) and the model descriptions are found in Baird et al. (2020).

Software/equipment used to create/collect the data: The CSIRO Environmental Modelling Suite (version 1.4.0), which runs on Linux operating system

Software/equipment used to manipulate/analyse the data: R (version 4.1.1), Python (version 3.10) and MATLAB R2023b. All software are supported by Windows 10 and Linux operating systems.

本数据集采集自大堡礁（Great Barrier Reef，GBR）区域，用于参数化簇状束毛藻（Trichodesmium）群落对束毛藻垂直运动的影响。研究依托澳大利亚海洋科学研究所（Australian Institute of Marine Science，AIMS）的高性能计算集群（High Performance Computing，HPC）搭建了修改版环境建模套件（Environmental Modelling Suite，EMS）应用程序，所用工具包括Linux操作系统、C编译器与NETCDF库，所用EMS版本为1.2.1。该修改版EMS源自eReefs模型（https://ereefs.org.au/ereefs），模型相关细节可参见Baird等人2020年的研究成果。

用于生成与采集数据的软件/设备：运行于Linux操作系统的澳大利亚联邦科学与工业研究组织（Commonwealth Scientific and Industrial Research Organisation，CSIRO）环境建模套件（版本1.4.0）。

用于处理与分析数据的软件：R（版本4.1.1）、Python（版本3.10）及MATLAB R2023b，上述软件均支持Windows 10与Linux操作系统。