Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse hippocampus (jrc_mus-hippocampus-1)

Segmentation description: Nuclei segmentations in jrc_mus-hippocampus-1 using Cellpose 2.0 with cursory manual corrections.
Software: Cellpose 2.0
Software DOI: https://doi.org/10.1038/s41592-022-01663-4
GPU: NVIDIA TITAN RTX
RAM: 768.0 GiB
Label voxel size (nm): 128 x 128 x 128 (x, y, z)
Reconstructed data dimensions (µm): 141.38 x 142.63 x 196.38 (x, y, z)
Classes annotated: Nucleus
Source dataset (EM) ID: jrc_mus-hippocampus-1
Source dataset (EM) voxel size (nm): 8 x 8 x 8 (x, y, z)
Source dataset (EM) data dimensions (µm): 141.38 x 142.63 x 196.38 (x, y, z)
Source dataset (EM) DOI: https://doi.org/10.25378/janelia.24085176
Dataset URL:s3://janelia-cosem-datasets/jrc_mus-hippocampus-1/jrc_mus-hippocampus-1.zarr/recon-1/labels/inference/segmentations/nuc/
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-hippocampus-1