Additional file 5: of Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

Heteroplasmic sites identified on the mitochondrial genomes of Loricarioidei catfishes. This spreadsheet file is sub-divided in 32 independent sheets; one containing the legend, another with a summary and one for each of the 31 Loricarioidei species, identified by their field numbers as detailed on Table 2 in the main text. The sheets for each species show every heteroplasmic position identified, the total number of supporting reads, as well as, for each nucleotide, the absolute count and its proportion. On the Summary sheet, each column contains all the heteroplasmic positions found for a single species (identified on the column head). The first column on the left shows the gene where this position is located. Genes coding for ribosomal RNAs are colored in green, while genes coding for transfer RNAs are colored in blue and protein coding genes are colored in orange. Lines represent homologous positions among the mitochondrial genomes from the different species. Three conditions were used to characterize a heteroplasmic site: first, different nucleotides were sequenced in the same position; second, that position must have more than 100 supporting reads; and third, the frequency of the second most frequent base must be higher than 10%. On the Summary sheet, the positions with more than 1000 supporting reads are highlighted in red. (XLSX 63 kb)