Pangenomes of multiple species for the "Cluster efficient pangenome graph construction with nf-core/pangenome" manuscript.
收藏资源简介:
Pangenomes of multiple species for the "Cluster efficient pangenome graph construction with nf-core/pangenome" manuscript. Each pangenome is represented in a FASTA format file. Each FASTA file was compressed with bgzip and subsequent indices were created with tabix. The name of each file specifies: The species, and the number of haplotypes. The built pangenomes graph are represented in GFA format. Each pangenome graph in the paper is uploaded here, too.
本数据集为《使用nf-core/pangenome实现高效聚类泛基因组图构建》("Cluster efficient pangenome graph construction with nf-core/pangenome")手稿配套的多物种泛基因组(pangenome)集合。 每个泛基因组以FASTA格式(FASTA format)文件存储,所有FASTA格式文件均通过bgzip完成压缩,并使用tabix生成配套索引文件。 各文件名的命名规则如下: 1. 包含物种名称; 2. 包含单倍型(haplotype)的数量。 本研究构建的泛基因组图以GFA格式(GFA format)表示,论文中涉及的全部泛基因组图均已上传至本数据集。



