The effector secretome of the Irish potato famine pathogen Phytophthora infestans

Phytophthora infestans is the most destructive pathogen of potato and a model organism for the oomycetes. Haas et al. (2009) reported the sequence of the 240 megabases (Mb) genome of P. infestans. In this dataset we provide an annotated list of candidate effectors that we identified in the proteome of P. infestans T30-4 (Haas et al. 2009). We have frozen this list since 2015 and we reference all the effectors with “PITG_xxxxx” numbers from this list. The proteins can be cross-referenced to the GenBank sequences using these PITG_xxxxx numbers. The matching GenBank accession for the genome assembly is GCA_000142945.1. We also provide here the assembly and gtf files. Reference: Haas, B.J., Kamoun, S., Zody, M.C., Jiang, R.H.Y., Handsaker, R.E., Cano, L.M., Grabherr, M., Kodira, C.D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T.O., Ah-Fong, A.M.V., Alvarado, L., Anderson, V.L., Armstrong, M.R., Avrova, A., Baxter, L., Beynon, J., Boevink, P.C., Bollmann, S.R., Bos, J.I.B., Bulone, V., Cai, G., Cakir, C., Carrington, J.C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M.A., Fugelstad, J., Gilroy, E.M., Gnerre, S., Green, P.J., Grenville-Briggs, L.J., Griffith, J., Grunwald, N.J., Horn, K., Horner, N.R., Hu, C.-H., Huitema, E., Jeong, D.-H., Jones, A.M.E., Jones, J.D.G., Jones, R.W., Karlsson, E.K., Kunjeti, S.G., Lamour, K., Liu, Z., Ma, L., MacLean, D., Chibucos, M.C., McDonald, H., McWalters, J., Meijer, H.J.G., Morgan, W., Morris, P.F., Munro, C.A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D.C., Schumann, U.D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D.J., Sykes, S., Thines, M., van de Vondervoort, P.J.I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B.C., van West, P., Ristaino, J., Govers, F., Birch, P.R.J., Whisson, S.C., Judelson, H.S., and Nusbaum, C. 2009. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461:393-398.

致病疫霉（Phytophthora infestans）是马铃薯最具破坏性的病原菌，同时也是卵菌（oomycetes）的模式生物。Haas等人（2009）已报道致病疫霉240兆碱基（Mb）的基因组序列。本数据集提供了在致病疫霉T30-4蛋白质组中鉴定得到的候选效应因子注释列表（Haas et al. 2009）。该列表自2015年起已固化，所有效应因子均采用该列表中的"PITG_xxxxx"编号进行引用。研究人员可通过这些"PITG_xxxxx"编号将对应蛋白质与GenBank序列进行交叉比对。该基因组组装对应的GenBank登录号为GCA_000142945.1。本数据集同时提供基因组组装文件与GTF文件。
参考文献：Haas BJ, Kamoun S, Zody MC, 等. 2009. 爱尔兰马铃薯饥荒病原菌致病疫霉的基因组序列与分析. 《自然》（Nature）461卷：393-398页。