遇见数据集

Example Lminor dataset for Seq2Fun issue #3 (Github)

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Zenodo2022-05-04 更新2026-05-25 收录
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This is the example dataset for the Seq2Fun issue #3 posted on github here. The compressed archive contains the following files: Directory (<em>raw_reads</em>) which contains subsampled (250k reads) mRNA-Seq fastq files (single-read 50bp) from full <em>Lemna minor</em> extracts. (For the files a respective multiQC html report from our RNASeq mapping pipeline is provided.) Sample table for batch processing (<em>lminor_sampleTable.tab</em>). Bash script (<em>seq2fun_analysis.sh</em>)<em> </em>to perform Seq2Fun analysis (runs smoothly without an error but is unable to map any reads) Output directory (<em>seq2fun</em>) with the files created with the <em>seq2fun_analysis.sh</em> script. I hope the provided files will help to solve the issue.

本数据集为发布于GitHub的Seq2Fun问题#3的示例数据集。该压缩归档包含以下内容:目录`raw_reads`,其内存储了来自完整小浮萍(Lemna minor)提取物的、经下采样至25万条读段的单端50bp mRNA测序(mRNA-Seq)fastq格式文件;针对各文件,附带了基于本团队RNA测序比对流程生成的MultiQC(多质量控制)HTML报告;用于批次处理的样本表`lminor_sampleTable.tab`;用于执行Seq2Fun分析的Bash脚本`seq2fun_analysis.sh`,该脚本可无错误运行,但无法完成任何读段的比对;以及输出目录`seq2fun`,其内存储了由`seq2fun_analysis.sh`脚本生成的全部文件。谨希望本次提供的文件能够为该问题的解决提供助力。

提供机构:
Zenodo
创建时间:
2022-05-04
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