Additional file 2: of dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies

Table S1. The model coefficients for human chrosomomes. The table displays the coefficients for the length, the relocation threshold and the intercept for the linear regression models obtained from the hg38 build of the human genome chromosomes. Table S2. The model coefficients for chimpanzee chrosomomes. The table displays the coefficients for the length, the relocation threshold and the intercept for the linear regression models obtained from the panTro6 build of the chimpanzee genome chromosomes. Table S3. The model coefficients for mouse chrosomomes. The table displays the coefficients for the length, the relocation threshold and the intercept for the linear regression models obtained from the mm10 build of the mouse genome chromosomes. Table S4. The model coefficients for rat chrosomomes. The table displays the coefficients for the length, the relocation threshold and the intercept for the linear regression models obtained from the rn6 build of the rat genome chromosomes. Table S5. The model coefficients for zebrafish chrosomomes. The table displays the coefficients for the length, the relocation threshold and the intercept for the linear regression models obtained from the danRer11 build of the zebrafish genome chromosomes. Table S6. Computed QUAST-LG metrics for human reference genome builds. Table S7. Computed QUAST-LG metrics for mouse reference genome builds. Table S8. Computed QUAST-LG metrics for rat reference genome builds. Table S9. Computed QUAST-LG metrics for chimpanzee reference genome builds. Table S10. Computed QUAST-LG metrics for zebrafish reference genome builds. Table S11. Computed QUAST-LG metrics, z-scores of the metrics, the rankings based on the z-scores and finally the Pearson Correlation coefficients of these rankings when compared to the summed z-score based ranking (i.e., the ground truth) for NA24835 assemblies. (XLSX 52 kb)