TAIR functional annotation data

Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in the included README file. <br> 1.ATH_GO_GOSLIM.txt.gz<br> This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and &gt;40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. <br> 2.gene_aliases_yyyymmdd.txt(.gz)<br> This file lists alternative names for each gene. <br> 3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br> This file contains links between loci, germplasms, and phenotypes. <br> <br> 4.Locus_Published_yyyymmdd.txt.gz<br> This file contains links between loci and publications. <br> <br> 5.po_temporal_gene_arabidopsis_tair.assoc.gz<br> po_anatomy_gene_arabidopsis_tair.assoc.gz<br> These two files are tab-delimited files. Each contains the <br> set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org). <br> 6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br> This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>本数据集为拟南芥信息资源库（The Arabidopsis Information Resource，TAIR，www.arabidopsis.org）按季度发布的经人工整理的拟南芥（Arabidopsis thaliana）基因功能数据。压缩归档内包含以下文件，详细说明见随附的README文件。 1. ATH_GO_GOSLIM.txt.gz 该文件为制表符分隔格式文本，包含由TAIR与TIGR基于基因本体联盟（Gene Ontology Consortium）受控词汇表（详见www.geneontology.org）所注释的拟南芥基因GO注释信息。此文件包含更新后的基于文献的注释集，以及逾40000条基于SWISS-PROT/INTERPRO的Nicola Mulder提供的INTERPRO结构域匹配结果的电子注释。若在研究中使用TAIR的GO注释，请引用以下论文：Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. 2. gene_aliases_yyyymmdd.txt(.gz) 该文件列出了各基因的别名。 3. Locus_Germplasm_Phenotype_yyyymmdd.txt.gz 该文件包含基因座、种质资源与表型之间的关联关系。 4. Locus_Published_yyyymmdd.txt.gz 该文件包含基因座与已发表文献之间的关联关系。 5. po_temporal_gene_arabidopsis_tair.assoc.gz、po_anatomy_gene_arabidopsis_tair.assoc.gz 上述两个文件均为制表符分隔格式文本，各自包含TAIR所注释的、基于文献的拟南芥基因与基因座的植物本体联盟（Plant Ontology Consortium，POC，www.plantontology.org）开发的植物本体术语注释集。 6. TAIR10或ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz) 该文件包含TAIR10基因组注释版本，或截至2017年6月30日发布的Araport11基因组注释版本中所包含的基因模型的功能描述信息。TAIR10/Araport11指代基因组注释的版本号。