Files for Main Figures
收藏NIAID Data Ecosystem2026-04-30 收录
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https://figshare.com/articles/dataset/Files_for_Main_Figure_3/21995072
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资源简介：
Fig 1
Long_read_TE_fc: Transposable elements individual quantified featureCounts result using long-read
Short_read_TE_fc: Transposable elements individual quantified featureCounts result using short-read
Long_read_coding_genes_fc: Coding genes quantified featureCounts result using long-read
Short_read_coding_genes_fc: Coding genes individual quantified featureCounts result using long-read
Inhouse_HCT116_telescope.tsv: Telescope output using inhouse HCT116 with random option
LocusMasterTE-TE_counts.tsv: LocusMasterTE output using inhouse HCT116
telescope-TE_counts: Telescope output using inhouse HCT116
Fig 3
Simulated_reads_quantification_mat : Quantified TEs in TPM counts in simulated short-read measured by 7 approaches. File used for main figure 3.
Fig 4
6 Cell lines TE matrices quantified by long-read, Telescope (short-read), LocusMasterTE (short-read)
SG-Nex_A549: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using A549 cell line in SG-NEx study
SG-Nex_HepG2: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HepG2 cell line in SG-NEx study
SG-Nex_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 cell line in SG-NEx study
SG-Nex_K562: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using K562 cell line in SG-NEx study
SG-Nex_MCF-7: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using MCF-7 cell line in SG-NEx study
Inhouse_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 sample generated by our lab
Fig 5
mutational_profile_TCGA-COAD: Mutational profiling of TCGA-COAD patients with MDA5-protected Alu elements from 5-azacytidine-treated ADAR wild-type samples.
创建时间：
2023-02-02
