Supplemental Material for Zhang et al., 2019

Table S1 The number and
percentage of total of cellular component, molecular function, biological
process of GO terms in seven transcriptome data sets. Each contig has multiple
GO terms during annotation leading to the number of GO terms more than contigs.
Figure
S1
GO classifications of all Eleusine
species’ transcriptomes. The results were summarized in three main categories:
biological process, cellular component and molecular function.

Figure
S2 Individual nuclear gene trees were constructed considering to predict
subgenome membership. These trees mainly include five types according to the
relationships among E. indica, E. tristachya, E. africana, and E. coracana:
(A) AA (Both E. coracana and E. africana are in the same clade with E. indica, and E. tristachya.), (B) AB (E.
coracana is in the same clade with E.
indica, and E. tristachya, while E. africana is not.), (C) BA (E. coracana is not in the same clade
with E. indica, and E. tristachya, while E. africana is.), (D) BB (E. indica, and E. tristachya are in the same clade, while E. africana and E. coracana
are not in the same clade with E. indica
and E. tristachya.), (E) Indeterminate
(E. indica, and E. tristachya are not in the same clade). The number of each type
is AA: AB: BA: BB: Indeterminate = 5: 10: 7: 32: 17. Inter, E. intermedia; multi, E. multiflora; flocc, E. floccifolia; indica, E. indica; trist, E. tristachya; afric, E. africana;
corac, E. coracana; bra, Brachypodium sylvaticum; rice, Oryza sativa; and maize, Zea mays.