BEST-CROP Variant Call Data for the barley cultivar Carbona

Variant call data for variety Carbona in "vcf" format from the University of Milan. Genomic DNA from individuals was sequenced to approximately 40x coverage using short (2*150nt) paired end reads. Reads were trimmed using FastP and mapped to the MorexV3 assembly with Bowtie2. PCR duplicate reads were marked with Samtools and variants were called using FreeBayes. Any questions about this data please contact David Horner (University of Milan) [e-mail]. This data is released under a CC BY-NC licence. In the case of reuse of this data, please acknowledge the BestCrop project (https://www.bestcrop.eu/index.html). Data is permanently hosted and available from https://germinate.hutton.ac.uk/best-crop/#/data/data-resources本数据集为米兰大学提供的Carbona品种VCF（Variant Call Format）格式变异检出数据。采用2×150nt双端短读长测序技术对个体基因组DNA进行测序，测序覆盖度约为40倍。使用FastP对测序读段进行质控修剪，通过Bowtie2将读段比对至MorexV3参考基因组组装版本；利用Samtools标记PCR重复读段，再通过FreeBayes完成变异检出。若对本数据集存在任何疑问，请联系米兰大学的David Horner（邮箱：[e-mail]）。本数据集采用CC BY-NC许可协议发布，如需复用本数据集，请注明BestCrop项目（网址：https://www.bestcrop.eu/index.html）。 本数据集永久存储并可通过以下网址获取：https://germinate.hutton.ac.uk/best-crop/#/data/data-resources