Open Reading Frame prediction
收藏Figshare2025-04-02 更新2026-04-28 收录
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https://figshare.com/articles/dataset/ORF_TransDecoder_zip/28715621
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Open reading frame (ORF) predicted by TransDecoder (v5.7.1) for 25 grassland plant species. Species list:Species_codeSpecies_nameGerPraGeranium pratenseLeuVulLeucanthemum vulgare agg.TriFlaTrisetum flavescensLotCorLotus corniculatusCreBieCrepis biennisBelPerBellis perennisDauCarDaucus carotaPruVulPrunella vulgarisTriPraTrifolium pratensePriVerPrimula verisHolLanHolcus lanatusAloPraAlopecurus pratensisGalMolGalium mollugo agg.KnaArvKnautia arvensisMedVarMedicago x variaPlaLanPlantago lanceolataLuzCamLuzula campestrisVerChaVeronica chamaedrysArrElaArrhenatherum elatiusTriDubTrifolium dubiumLatPraLathyrus pratensisVicCraVicia craccaRanAcrRanunculus acrisPlaMedPlantago mediaAjuRepAjuga reptansAnalyse pseudo code:#! /usr/binLongOrf='path/to/TransDecoder-TransDecoder-v5.7.1/TransDecoder.LongOrfs'Predict='path/to/TransDecoder-TransDecoder-v5.7.1/TransDecoder.Predict'for i in {01..25}; do# the number corresponding to a particular speciescd path/to/isoSeqData/BMK230426-BJ202-01P000$i;$LongOrf -t BMK230426-BJ202-01P000$i.flnc.clustered.isoforms.fa;$Predict -t BMK230426-BJ202-01P000$i.flnc.clustered.isoforms.fa;done
创建时间:
2025-04-02



