human_pancreas_luecken

Pancreas dataset with complex batch effects (different assays) from Luecken et. al ## Processed AnnData Objects This deposit contains processed AnnData objects (single-cell genomics data) that were processed using the `adata_hf_datasets` Python package. The files are in HDF5 (.h5ad) or Zarr format and contain preprocessed gene expression data along with computed embeddings. ### Available Embeddings (.obsm layers) The AnnData objects contain the following embedding layers: `X_pca`, `X_scvi_fm`, `X_geneformer`, `X_gs10k`, `X_geneformer-v1`, `X_cw-geneformer`. ## Related Resources - **HuggingFace Dataset**: [jo-mengr/human_pancreas_luecken_single_no_caption](https://huggingface.co/datasets/jo-mengr/human_pancreas_luecken_single_no_caption)- **Raw Data Source**: [Download](https://figshare.com/ndownloader/files/24539828) ## Package Information These files were processed using the `adata_hf_datasets` package. For more information about the processing pipeline, please refer to the associated HuggingFace dataset repository.来自Luecken等人的、包含复杂批次效应（不同检测实验）的胰腺数据集 ## 经处理的AnnData对象 本数据集存档包含通过`adata_hf_datasets` Python包处理得到的AnnData对象（单细胞基因组学数据）。文件格式为HDF5（.h5ad）或Zarr，其中存储了经过预处理的基因表达数据与已计算得到的嵌入表征。 ### 可用嵌入表征（.obsm 层） 该AnnData对象包含以下嵌入层：`X_pca`、`X_scvi_fm`、`X_geneformer`、`X_gs10k`、`X_geneformer-v1`、`X_cw-geneformer`。 ## 相关资源 - **HuggingFace 数据集**：[jo-mengr/human_pancreas_luecken_single_no_caption](https://huggingface.co/datasets/jo-mengr/human_pancreas_luecken_single_no_caption) - **原始数据源**：[下载](https://figshare.com/ndownloader/files/24539828) ## 工具包信息 本数据集文件通过`adata_hf_datasets`工具包完成处理。如需了解更多处理流程细节，请参阅关联的HuggingFace数据集仓库。