reference data for TidyGWAS
收藏资源简介:
Reference data curated for tidyGWAS, for version 1.0.0 Contains: RSID, CHR, POS, ALT ALLELE and REF ALLELE from dbSNP v155, for both GRCh37 and GRCh38 Allele frequencies for five super populations from 30x 1000 genomes dbSNP merged RSID data Indel reference data, left-aligned and trimmed from dbSNP157 Allele frequenecy for UKB populations for ancestry composition Ancestry_data.parquet contains merged allele frequences and principal components downloaded from:https://figshare.com/ndownloader/files/31620968 https://figshare.com/ndownloader/files/31620953
本参考数据为tidyGWAS 1.0.0版本的精心整理参考数据集。 包含以下内容: - 覆盖GRCh37与GRCh38两个参考基因组版本的、来自单核苷酸多态性数据库(dbSNP)v155的RSID、CHR、POS、替代等位基因(ALT ALLELE)与参考等位基因(REF ALLELE)信息; - 来自30x测序深度的千人基因组计划(1000 Genomes)中五个超级人群的等位基因频率数据; - dbSNP合并RSID数据集; - 取自dbSNP157、经左对齐与序列修剪的插入缺失(Indel)参考数据集; - 英国生物库(UKB)人群的祖源构成等位基因频率数据。 Ancestry_data.parquet 文件包含从以下链接下载的合并等位基因频率与主成分数据: https://figshare.com/ndownloader/files/31620968 以及 https://figshare.com/ndownloader/files/31620953



