遇见数据集

Additional Supplement Data of the manuscript "Epigenome-Wide Association Study of Asthma Exacerbations in Europeans"

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Zenodo2025-02-11 更新2026-05-26 收录
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For this manuscript we conducted an epigenome-wide association study of asthma exacerbations following a discovery and validation design. The discovery phase includes GEMAS study, which is divided into two subsets (312 Canary Islanders and 94 Basques). Separately summary statistics are avaliable for each subset: "25_EWAS_GEMAS_EPIC_Exacerbations_mval_lineal_age-sex-batch-pcs-ccReFACTor_filtered.txt" for Canary Islanders and "25_EWAS_GEMAS_PV_EPIC_Exacerbations_mval_lineal_age-sex-batch-pcs-ccReFACTor_filtered.txt" for Basques including the following columns: probes: Probe ID logFC: estimate of the log2-fold-change corresponding to the effect SE: standard error CI.L: left limit of confidence interval for logFC CI.R: right limit of confidence interval for logFC t: moderated t-statistic P.Value: raw p-value adj.P.Val: adjusted p-value by false discovery rate CHR: chromosome pos: genomic position based on hg38/GRCh38 UCSC_RefGene_Name: gene annotation based on Illumina EPIC Manifest file v 1.0 B4 In addition, we performed a meta-analysis whose results summary statistics output is organized in the following columns: RSID: Probe ID STUDY: number of studies or subsets were is present the probe BETA_meta: coefficient estimate SEBETA_meta: standard error PVALUE_meta: raw p-value PVALUE_Q: p-value of Cochran’s Q Model: FE (fixed effect) or RE2 (random effect) PVALUE_meta_adj: adjusted p-value by false discovery rate

本研究针对哮喘急性加重开展表观基因组全关联研究(Epigenome-Wide Association Study,EWAS),采用发现-验证研究设计。发现阶段纳入GEMAS研究,该研究分为两个亚组:312名加那利群岛居民与94名巴斯克人。为每个亚组分别提供了独立的汇总统计数据:针对加那利群岛居民的文件为"25_EWAS_GEMAS_EPIC_Exacerbations_mval_lineal_age-sex-batch-pcs-ccReFACTor_filtered.txt",针对巴斯克人的文件为"25_EWAS_GEMAS_PV_EPIC_Exacerbations_mval_lineal_age-sex-batch-pcs-ccReFACTor_filtered.txt",两类文件均包含以下列: 探针ID(Probe ID):探针标识符; logFC:对应效应的log₂倍变化估计值; SE:标准误(Standard Error); CI.L:log₂倍变化的置信区间左边界; CI.R:log₂倍变化的置信区间右边界; t:调节t统计量(Moderated t-statistic); P.Value:原始P值; adj.P.Val:经错误发现率(False Discovery Rate)校正的P值; CHR:染色体(Chromosome); pos:基于hg38/GRCh38参考基因组的基因组位置; UCSC_RefGene_Name:基于Illumina EPIC芯片注释文件v1.0 B4的基因注释; 此外,本研究开展了荟萃分析,其结果的汇总统计文件包含以下列: RSID:探针ID(Probe ID); STUDY:该探针所涉及的研究/亚组数量; BETA_meta:荟萃分析系数估计值; SEBETA_meta:标准误; PVALUE_meta:原始P值; PVALUE_Q:科克伦Q检验P值; Model:模型类型,包括FE(固定效应模型,Fixed Effect)与RE2(随机效应模型,Random Effect); PVALUE_meta_adj:经错误发现率校正的荟萃分析P值

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2025-02-11
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