Python script for pattern search in Sox2 binding sequences

Cock PA, Antao T, Chang JT, Bradman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B and de Hoon MJL (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25, 1422-1423 Chapman BA and Chang JT (2000). Biopython: Python tools for computational biology. ACM SIGBIO Newsletter, 20, 15-19 Shirley MD, Ma Z, Pedersen B, Wheelan S. Efficient "pythonic" access to FASTA files using pyfaidx. PeerJ PrePrints 3:e1196. 2015. Dhanusha Yesudhas, Muhammad Ayaz Anwar, Suresh Panneerselvam, Kim Han Kyul & Sangdun Choi*An approach to evaluate binding affinities of Sox2 with distinct DNA binding sequences by Umbrella Sampling (Manuscript under preparation)* http://sangdunchoi.openwetware.org/ Boyer, L. A. et al. Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122, 947-956, doi:10.1016/j.cell.2005.08.020 (2005).

Cock PA、Antao T、Chang JT、Bradman BA、Cox CJ、Dalke A、Friedberg I、Hamelryck T、Kauff F、Wilczynski B 及 de Hoon MJL (2009) Biopython：面向计算分子生物学与生物信息学的开源Python工具集。《生物信息学（Bioinformatics）》，25卷，1422-1423页。
Chapman BA、Chang JT (2000) Biopython：面向计算生物学的Python工具。《ACM SIGBIO通讯（ACM SIGBIO Newsletter）》，20卷，15-19页。
Shirley MD、Ma Z、Pedersen B、Wheelan S (2015) 使用pyfaidx实现对FASTA文件的高效"pythonic"访问。《PeerJ预印本（PeerJ PrePrints）》，3卷:e1196。
Dhanusha Yesudhas、Muhammad Ayaz Anwar、Suresh Panneerselvam、Kim Han Kyul 及 Sangdun Choi* 基于伞形采样（Umbrella Sampling）评估Sox2与不同DNA结合序列结合亲和力的方法（稿件待发表）* 链接：http://sangdunchoi.openwetware.org/
Boyer LA 等 (2005) 人类胚胎干细胞的核心转录调控环路。《细胞（Cell）》，122卷，947-956页，DOI:10.1016/j.cell.2005.08.020。