TRcompDB v1.0, a global reference of tandem repeat variation
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The v-2.1 "vamos" motif sets and the TR annotations using 360 publicly available long-read assemblies (TRCompDB).Data are provided for both GRCh38 and T2T-CHRM13 reference genomes. TR annotations are provided as combined vcf file. “oriMotifs” stands for the full motif set before efficient motif selection. “effMotifs-0.x” stands for the efficient motifs selected under q=0.x.
本数据集包含v-2.1版“vamos”基序(motif)集,以及利用360个公开可用长读长组装序列(TRCompDB)生成的串联重复(Tandem Repeat, TR)注释。相关数据同时覆盖GRCh38与T2T-CHRM13两种参考基因组。串联重复注释以合并后的VCF(Variant Call Format, VCF)文件形式提供。"oriMotifs"指代高效基序筛选前的完整基序集合;"effMotifs-0.x"指代在q=0.x参数下筛选得到的高效基序集合。
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Zenodo创建时间:
2024-08-08



