file 15 - R code for simulations with null alleles introduced to three loci or three loci removed

This code runs simulations based on observed allele frequencies in the control population but with null alleles artificially introduced to three randomly selected loci at a frequency of 0.05 or these same three loci removed from the data set. This method does not take linkage into account. The output will include mean and 95% confidence intervals for both relatedness and inbreeding estimates. This code links to the following files, which must be in the working directory: file 1 and files 22 – 25.