Sequencing data and taxonomic assignments from: Biodiversity and vector-borne diseases: host dilution and vector amplification occur simultaneously for Amazonian leishmaniases

This is the sequencing data used in the paper: \"Biodiversity and vector-borne diseases: host dilution and vector amplification occur simultaneously for Amazonian leishmaniases\" by Kocher et al. The study aims at assessing the effects of biodiversity changes on Leishmania transmission using molecular analyses of sand fly pools and blood-fed dipterans. The data is split in three files corresponding to the PCR amplicons used in the study (Ins16S for insect identifications, 12SV5 for vertebrate identifications and leishmini for Leishmania identifications). Each file combines output from different Illumina Miseq and Hiseq runs, after read demultiplexing and adapter trimming, dereplication and removal of reads present in less than 10 copies (but before further read filtering). The data is presented in tabular format (similar to the output of the obitab command from the obitools package), together with information on the corresponging sample, sequencing run, and taxonomic assignments (performe...

本数据集为Kocher等人发表的论文《生物多样性与虫媒传染病：亚马逊利什曼病同时存在宿主稀释与媒介扩增效应》所用的测序数据。本研究旨在通过对沙蝇混合样本以及吸血双翅目昆虫开展分子分析，评估生物多样性变化对利什曼原虫（Leishmania）传播的影响。本数据集分为三个文件，分别对应研究中使用的PCR扩增产物：用于昆虫物种鉴定的Ins16S、用于脊椎动物物种鉴定的12SV5，以及用于利什曼原虫（Leishmania）鉴定的leishmini。每个文件整合了不同Illumina MiSeq和HiSeq测序运行的产出数据，这些数据已完成读段解复用、接头修剪、序列去重复以及去除拷贝数少于10的测序读段等预处理步骤，但尚未进行进一步的读段过滤。本数据集以表格格式呈现（格式与obitools工具包中obitab命令的输出结果类似），并附带对应样本、测序运行以及分类学注释（已完成……）