Genome Assembly and Annotation of Biscutella laevigata subspecies austriaca v1
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https://zenodo.org/record/14645431
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资源简介：
Genome Assembly and Annotation of Biscutella laevigata subspecies austriaca v1
Description of the data and file structure
Genome assembly, gene and TE annotation of Biscutella laevigata subsp. austriaca v1 released along with Beringer and Choudhury et al 2024 MBE,
https://doi.org/10.1093/molbev/msae155
Organism = Biscutella laevigata subsp. austriaca
NCBI-Taxonomy-ID = 1532295
Assembly-version = v1.0
Annotation-version = v1.0
Files and variables
File: Biscutella_laevigata_austriaca_v1.0_TE_annotation.gff
Description: Transposable element annotation in GFF3 format with tracks for LTR retrotransposon, DNA transposon, Helitron, LINE, MITEs features.
File: Biscutella_laevigata_austriaca_v1.0_filtered_gene_annotation.gff
Description: Gene annotation in GFF3 format with tracks for gene, mRNA, exon, CDS, 3'UTR, 5'UTR, and tRNA features.
File: Biscutella_laevigata_austriaca_v1.0.fasta
Description: Genome assembly in FASTA format with 14 main scaffolds (Scaffold_1, Scaffold_2, Scaffold_3_part1, Scaffold_3_part2, Scaffold_4, Scaffold_5, Scaffold_6, Scaffold_7, Scaffold_8, Scaffold_9, Scaffold_10, Scaffold_11, Scaffold_12, Scaffold_13) that represents the Ba Chromosomes.
Access information
Other publicly accessible locations of the data:
https://genomevolution.org/coge/GenomeInfo.pl?gid=67230.
Data was derived from the following sources:
PacBio long reads (SRR26423064), Paired-end Illumina short reads (SRX8787129), 10× genomics-linked reads (SRX8815186), Chicago Illumina short reads (SRR26396391), and Hi-C Illumina short reads (SRR26404274). Transcriptomic data: RNA seq among tissues (ERP132985) and RNA seq among environmental treatments (ERP132838)
创建时间：
2025-01-14
