Supplementary Data for "Phylogeny and evolution of dissimilatory sulfite reduction in Prokaryotes"

Supplementary Data for "Phylogeny and evolution of dissimilatory sulfite reduction in Prokaryotes"

Supplementary Data 1: The information of the genomes we used in our analyses. The “DsrAB” sheet included the information of DsrAB-containing genomes and denoted whether DsrC, DsrM, DsrK, DsrJ, DsrO, DsrP genes were present. The other sheets included the information of the representative genus-level genomes which comprised DsrAB. These genomes were used to reconstruct genus-level phylogenies to compare tree topologies within phylum. See the “Note” sheet for more details. Supplementary Data 2: The raw data of Ka/Ks values of each gene pair estimated by KaKs_calculator v2.0 with MA method. Supplementary Data 3: the information of the COGs of iron-reducers and SRMs, respectively. Supplementary Data 4: fasta files used for tree reconstruction, including Dsr-related proteins and concatenated sequences for phylogenomic trees. The folder names indicated their analytical purposes. Supplementary Data 5: tree files used in our analyses, including Dsr trees, genetic distance-based trees and dated phylogenetic trees. The folder names indicated their analytical purposes.