遇见数据集

Xenium data from 11 dorsolateral prefrontal cortex (DLPFC) tissue sections

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Zenodo2025-03-05 更新2026-05-26 收录
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This dataset is comprised of data from 4 Xenium slides, including 11 tissue sections collected from 8 unique donors. Data was processed using Xenium Ranger with no expansion (nuclear segmentation only), and the resulting outputs are shared here in compressed (tarball) format. Each file contains the Xenium Ranger output from a single tissue section. File names are formatted as SLIDE_REGION_DONOR, such that samples imaged on the same slide will have the same SLIDE value, REGION denotes the physical location within each Xenium slide, and DONOR is an identifier of the donor from which each tissue section was obtained. This data was collected using a 366-gene panel, comprised of the Xenium Human Brain panel (266 target genes) and an additional custom panel aimed at identifying immune subtypes (100 target genes). For a full list of gene symbols and ENSEMBL codes, see the included `gene_panel.csv` file (gene symbols are also in the metadata contained within each of the individual sample's results)

本数据集包含4张Xenium玻片(Xenium)的数据,涵盖从8名不同供体采集的11份组织切片。数据采用仅执行细胞核分割、未进行扩展处理的Xenium Ranger(Xenium Ranger)分析工具完成处理,最终分析结果以tar压缩包(tarball)格式在此共享。 每份文件对应单份组织切片的Xenium Ranger输出结果。文件名遵循`SLIDE_REGION_DONOR`格式规范:同一玻片成像的样本具有相同的SLIDE字段值;REGION用于标识每张Xenium玻片内的物理成像区域;DONOR则为对应组织切片的供体唯一标识符。 本数据采用包含366个靶基因的基因检测面板(gene panel)采集得到,该面板由Xenium人脑专用基因检测面板(266个靶基因)与额外定制的免疫亚型识别基因检测面板(100个靶基因)组合而成。如需获取完整的基因符号与ENSEMBL(ENSEMBL)编码列表,请参阅附带的`gene_panel.csv`文件;各单样本结果文件内的元数据中同样收录有基因符号信息。

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Zenodo
创建时间:
2025-03-05
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