CollecTRI2 dataset and regulome

This record contains CollecTRI2, a dataset of transcriptional regulatory interactions aggregated from multiple sources, including text-mined interactions from biomedical literature and manually curated datasets. It also includes a derived regulome, representing transcription factor–target gene relationships with associated direction of regulation, suitable for downstream analyses such as transcription factor activity inference. Files included: CollecTRI2.tsv.gz: aggregated TF–TG interactions from multiple sources CollecTRI2_regulome.tsv.gz: derived regulome with signed interactions This dataset accompanies the ExTRI2 manuscript, “ExTRI2: Harnessing Transformers for Enhanced Mining of Transcription Regulation Interactions.”