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Raw Nanopore sequencing data of CD-pore-seq V1: TelN PromethION SRICO_PromeR2 1

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Zenodo2026-05-11 更新2026-05-26 收录
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=Raw Nanopore sequencing data of CD-pore-seq V1= ==Author==Zicheng Yu1, Zihao Chen1, Thomas C. Williams1,2, Craig J. Anderson1,3,4, Andrew P. Jackson1,*, Martin A.M. Reijns1,*, Martin S. Taylor1,*1 MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, UK.2 Child Life and Health, University of Edinburgh, UK.3 German Cancer Research Center, Heidelberg, Germany4 Department of Translational Oncology, German Cancer Research Center, Munich, Germany. * Correspondence should be addressed to andrew.jackson@ed.ac.uk, martin.reijns@ed.ac.uk and martin.taylor@ed.ac.uk ==Citation=='Generalised training for DNA modification detection by nanopore sequencing' ==Description==Nanopore sequencing data of libraries to train machine learning models to predict single DNA-embedded ribonucleotides.Ligation kit: LSK-114 (all except for ygDNA) or SQK-NBD114.96 (ygDNA)Flow-cell version: R10.4.1Sequencing device: MinION or PromethION (./TelN/PromethION only) ==TelN==* Sequencing the TelN library (high-complexity randomers surrounding single DNA-embedded ribonucleotides) on a MinION flow-cell (./MinION) or two PromethION flow-cells (PromethION), prepared by CD-pore-seq (with the second strand synthesised by the primer containing TelN recognition sequence, cut and covalently linked by TelN digestion).

=CD-pore-seq V1 原始纳米孔测序数据= ==作者== Zicheng Yu¹, Zihao Chen¹, Thomas C. Williams¹,², Craig J. Anderson¹,³,⁴, Andrew P. Jackson¹,*, Martin A.M. Reijns¹,*, Martin S. Taylor¹,* ¹ 英国爱丁堡大学遗传学与癌症研究所MRC人类遗传学研究室 ² 英国爱丁堡大学儿童生命与健康学院 ³ 德国海德堡德国癌症研究中心 ⁴ 德国慕尼黑德国癌症研究中心转化肿瘤学系 * 通讯作者请联系:andrew.jackson@ed.ac.uk、martin.reijns@ed.ac.uk 及 martin.taylor@ed.ac.uk ==引用== 《基于纳米孔测序的DNA修饰检测通用训练方法》 ==数据集描述== 本数据集为用于训练机器学习模型以预测单DNA嵌入核糖核苷酸的文库的纳米孔测序数据。 连接试剂盒:除ygDNA样本外均采用LSK-114,ygDNA样本采用SQK-NBD114.96 测序流动槽版本:R10.4.1 测序设备:MinION 或 PromethION(仅TelN/PromethION组适用) ==TelN== * TelN文库测序:该文库为环绕单DNA嵌入核糖核苷酸的高复杂度随机序列文库,通过CD-pore-seq方法制备(其第二条链由携带TelN识别序列的引物合成,经TelN酶切后实现共价连接),可在MinION流动槽(./MinION组)或两台PromethION流动槽(PromethION组)上完成测序。

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