Sequencing data (RADseq) for single nucleotide polymorphisms in colour variable European fire salamanders

NIAID Data Ecosystem2026-03-12 收录

颜色多态性

种群基因组学

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP251669 数据链接链接失效反馈

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The aim of this study was to identify genomic associations and signals of selection on colour pattern in a colour variable European salamander species.

创建时间：

2020-08-29

Measuring viability selection from prospective cohort mortality studies: a case study in Maritime pine

阶段特异性生存选择

种群基因组学

By changing the genetic background available for selection at subsequent life stages, stage-specific selection can define adaptive potential across the life cycle. We propose and evaluate here a neutr

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Whole genome re-sequences of Japanese Okinebe stickleback populations

种群基因组学

物种进化分析

Whole genome re-sequences of sticklebacks (Gasterosteus). Fishes were collected at Okinebe Pond, Hokkaido, Japan. This is a sympatric site of the Japanese Pacific Ocean population of threespine stickl

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After being on the brink of extinction in the late 1960s, peninsular Italian wolves rebounded and recolonized most of the peninsula. Despite that, the consequences of the historical bottleneck on their genomic make-up is still lacking. We sequenced whole genomes of thirteen individuals and conducted population genomics analyses, including a comparison with wolves from two highly-inbred wolf populations. Our findings indicate that the peninsular Italian wolf population is still susceptible to bottleneck legacies, which could lead to local inbreeding depression in case of population reduction or fragmentations.

种群基因组学

野生动物保护

Preserving genetic diversity and adaptive potential while avoiding inbreeding depression is crucial for the long-term conservation of natural populations. Despite demographic increases, traces of past

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Protea repens population genomic raw sequence reads. Protea repens

种群基因组学

自然选择检测

We sampled nineteen populations across the range of Protea repens and used genotyping by sequencing (GBS) to identify 2066 polymorphic loci in 663 individuals. We used a Bayesian FST-outlier analysis

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Raw sequence reads of Fraxinus excelsior from ddRAD

种群基因组学

ddRAD-seq

Raw sequence reads of 300 individuals of Fraxinus excelsior from 30 populations in Poland, obtained through double digest restriction-site associated DNA (ddRAD) sequencing.

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Sequencing data (RADseq) for single nucleotide polymorphisms in colour variable European fire salamanders

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