In Situ Sequencing data used in "ISTDECO: In Situ Transcriptomics Decoding by Deconvolution"

This repository contains a few image slices from an in situ sequencing experiment [1]. The data is organized as follows: Each folder corresponds to a staining round. Each .tif image corresponds to a channel. The codebook can be loaded from the .mat file using MATLAB's load function or scipy.io.loadmat in Python. <strong>Acknowledgment:</strong> We kindly thank Qian et al. [1] for sharing their image data. <strong>References</strong> [1] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106.本仓库包含原位测序（in situ sequencing）实验的若干图像切片[1]。数据按如下方式组织：每个文件夹对应一轮染色，每张.tif格式图像对应一个成像通道。该实验的码本可通过MATLAB的load函数或Python的scipy.io.loadmat从.mat格式文件中加载。 <strong>致谢：</strong>我们衷心感谢Qian等人[1]分享其图像数据。 <strong>参考文献</strong> [1] Qian, Xiaoyan, 等. 概率细胞分型实现密切相关细胞类型的原位精细定位. 《自然-方法》, 2020, 17(1): 101-106.