Tremble_et_al_2023_BoletaceaePhylogeny.zip

This folder contains all gene alignments produced by mafft, gene trees produced by iqtree2, and coalescent species tree produced by astral.File Descriptions:Boletaceae_allBUSCO_astral-hybrid_summaryCoalescent.BS10_branchDropped.paxillusRoot.tre = This is the summary coalescent phylogeny produced by astral hybrid from all BUSCO genes used in the study, and is rooted with Paxillus.Boletaceae_allBUSCO_astral-hybrid_summaryCoalescent.BS10_branchDropped.tre = This is the unrooted summary coalescent phylogeny produced by astral hybrid from all BUSCO genes used in the study.Boletaceae_allBUSCO_concatenatedSupermatrix.mafft.fasta.gz = Alignment of all BUSCO genes concatenated. Boletaceae_allBUSCO_concatenatedSupermatrix.partitions.txt.gz = Partitions of all BUSCO gene concatenated dataset. Boletaceae_allBUSCO_concatenatedSupermatrix.treefile = Summary coalsecent phylogeny with branch lengths estimated with IQtree using the above concatenated dataset.alignments/ = BUSCO gene alignments with specimenID and geneID in fasta header. alignments_noGeneName/ = BUSCO gene alignments with only specimenID in fasta headerraw_genes/ = unaligned BUSCO genes with specimenID and geneID in fasta header.treefiles/ = individual gene trees produced from BUSCO genes with iqtree2 <br>