GToTree prepackaged single-copy gene HMMs
收藏NIAID Data Ecosystem2026-05-02 收录
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https://zenodo.org/record/7860734
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资源简介：
SCG HMM datasets from the initial publication of GToTree, based on NCBI, updated with modified "Universal" set from the initial GToTree release thanks to notes from Molly Chen
- PF00181 ("Ribosomal_L2") was changed to PF03947 ("Ribosomal_L2_C") - the C-terminal (which PF03947 covers) is better conserved - PF00827 ("Ribosomal_L15") was changed to PF00828 ("Ribosomal_L27A") - PF00827 was archaea/euk only, PF00828 holds the bac/arc L15 also - PF17135 ("Ribosomal_L18") was changed to PF00861 ("Ribosomal_L18p") - PF00861 is better conserved
For general process, see: https://github.com/AstrobioMike/GToTree/wiki/SCG-sets
创建时间：
2024-09-30
