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Lactococcus type III-A CRISPR knockdown platform RNA-seq

NIAID Data Ecosystem2026-03-13 收录

CRISPR干扰

原核生物转录调控

数据链接：

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA827813 数据链接链接失效反馈

官方服务：

资源简介：

A type III-A CRISPR-Cas system was used to create a platform for post-transcriptional RNA depletion in prokaryotes. RNA-seq data to test the platform is provided here.

应用场景：

创建时间：

2022-04-18

原核生物转录调控

基因表达全基因组响应

The robustness and sensitivity of gene networks to environmental changes is critical for cell survival. How gene networks produce specific, chronologically ordered responses to genome-wide perturbatio

NIAID Data Ecosystem80

Pharmacological activation of the Integrated Stress Response triggers a transcriptional program centered on ribosome biogenesis and function in honey bees

蜜蜂整合应激反应

原核生物转录调控

Seeking to further characterize the effect of Halofuginone in honey bees and to better understand cellular stress pathways in this species more generally, we used RNAseq to identify novel changes in g

NIAID Data Ecosystem50

Constitutive Promoters (Type-A Spacers).

原核生物转录调控

启动子识别

A total of 1,075 RpoD holoenzyme-binding sites were identified within spacers on the entire E. coli K-12 W3110 genome. The constitutive promoters were predicted within type-A and type-B intergenic spa

NIAID Data Ecosystem20

CRISPRi RNA-seq from K562 (ENCSR103URL)

CRISPR干扰

RNA测序

RNA-seq on K562 cells treated by CRISPR interference targeting ZNF384. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENC

NIAID Data Ecosystem60

Additional file 4 of Systematic functional interrogation of human pseudogenes using CRISPRi

CRISPR干扰

基因功能研究

Additional file 4: Supplementary Table 3. The sequences of the sgRNAs, siRNAs, shRNAs and PCR primers and the information about antibodies.

Figshare2024-02-12 更新30