CS-IAAS_v1.1
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A complete bread wheat telomere-to-telomere genome provides insights into the evolution, transcriptome, and proteome of a hexaploid genome Peking University Institute of Advanced Agricultural Sciences, Complete assemblies of huge and complex plant genomes remain a challenge, and the hexaploid wheat genome stands as the most difficult one among staple food crop genomes. Here, we present CS-IAAS, a comprehensive telomere-to-telomere (T2T) gap-free Triticum aestivumL. reference genome, encompassing 14.51 billion base pairs and featuring all 21 centromeres and 42 telomeres. ## The genome sequence of Triticum aestivum cv. Chinese Spring CS-IAAS_v1.1.zip ## Annotation of CS-IAAS_v1.1 All gene structure are in GFF format for both High Confidence and Low Confidence genes. CS-IAAS_v1.1_annotation.zip All gene function are for both High Confidence and Low Confidence genes. CS-IAAS_v1.1_function_annotation.zip ## TE Annotation of CS-IAAS_v1.1 TE_v1.1.gff3 TE_v1.1.class.gff3 ((Include TE (Transposable Element) Classification)) Code/Software Packages involved in data analysis pipelines are listed in the Methods. The code used for assembly and evaluation is available on GitHub at: https://github.com/liushoucheng/SPART.
完整面包小麦端粒到端粒基因组为六倍体基因组的进化、转录组与蛋白质组研究提供新见解 北京大学现代农业研究院 庞大且复杂的植物基因组完整组装仍是一项技术挑战，而六倍体小麦基因组更是主粮作物基因组中难度最高的研究对象。本研究报道了CS-IAAS，这是一套完整的端粒到端粒（telomere-to-telomere, T2T）无间隙普通小麦（Triticum aestivum L.）参考基因组，组装总长145.1亿碱基对，包含全部21个着丝粒与42个端粒。 ## 普通小麦中国春（Triticum aestivum cv. Chinese Spring）基因组序列 CS-IAAS_v1.1.zip ## CS-IAAS_v1.1基因组注释 所有基因结构均以GFF格式存储，涵盖高置信度与低置信度两类基因。 CS-IAAS_v1.1_annotation.zip 所有基因功能注释同样覆盖高置信度与低置信度基因。 CS-IAAS_v1.1_function_annotation.zip ## CS-IAAS_v1.1转座因子注释 TE_v1.1.gff3 TE_v1.1.class.gff3（包含转座因子（Transposable Element, TE）分类信息） ## 代码与软件 数据分析流程所涉及的软件包详见研究方法。基因组组装与评估所用代码可于GitHub平台获取： https://github.com/liushoucheng/SPART.
