List of publicly available cellular reprogramming HTS datasets
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These datasets were obtained by manual curation via the following procedure: First, I queried GEO using keywords in the list below. Yamanaka Yamanaka AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) Reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) OSKM AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) Sox2 AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) Sox2 reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) somatic reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) somatic cell reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) Reprogramming pluripotency AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) Reprogramming pluripotency Reprogramming pluripotency AND ("Methylation profiling by high throughput sequencing"[Filter]) OSKM AND ("Methylation profiling by high throughput sequencing"[Filter]) Sox2 Reprogramming AND ("Methylation profiling by high throughput sequencing"[Filter]) Results were selected for manual input if they contained either transcriptomic (e.g., RNA-Sequencing) or epigenomics (e.g., RRBS) data and had at least one intermediate cellular reprogramming timepoint.
